Thesis on ASD - Autism Spectrum Disorder

TITU MAIORESCU UNIVERSITY OF BUCHAREST

FACULTY OF MEDICINE

STUDY PROGRAM: MEDICINE

BACHELOR THESIS

Title: “Correlations Between Genotype and Phenotype in Autism Spectrum Disorder”

Scientific Coordinator:

Assoc. Prof. Dr. Magdalena Budișteanu

Graduate:

Ionescu Sarah Sânziana

Bucharest – Year of Graduation: 2024

1. Introduction

A. Relevance and Topicality of the Subject

Autism Spectrum Disorder (ASD) represents a subject of major importance in the field of public health and neuropsychiatric research. The significant increase in diagnoses over recent decades has highlighted the need for a deeper understanding of this disorder.

According to data provided by the Centers for Disease Control and Prevention (CDC) in the United States, the global prevalence of autism is estimated at approximately one in one hundred children, or about one percent of the global pediatric population—a result similar to that published by the European Union Statistics on Income and Living Conditions (EU-SILC), which indicates a prevalence between one and one point five percent.

In Romania, the National Institute of Public Health (INSP) reported a prevalence between one in fifty-four and one in sixty-eight children, or between one point four seven percent and one point eight five percent—slightly above the European average.

Definition and Characteristics of ASD:

ASD is defined as a neurodevelopmental disorder characterized by difficulties in social interaction, impaired communication, and repetitive or restrictive behaviors. These features can vary significantly from one individual to another, resulting in a wide spectrum of clinical presentations.

The diagnosis is usually established in early childhood, with symptoms typically becoming evident before the age of three.

An autism diagnosis can significantly impact the quality of life for both the affected individual and their family. Individuals with autism may experience social isolation, stress, and anxiety due to difficulties with communication and interaction, which affects emotional well-being and personal development. There may also be a constant need for support in daily activities and specific adaptations to facilitate participation in education and social engagement.

For the family, the diagnosis of a child with autism can represent a significant challenge, involving major changes in family dynamics and future planning. Families may experience emotional and physical stress due to caregiving demands and the need to navigate complex healthcare and educational systems. Financial resources may also be a concern, as specialized treatments and interventions can incur substantial costs.

B. Purpose of Choosing the Topic and Proposed Objectives

The main purpose of this thesis is to investigate the relationship between genotype and phenotype in the context of ASD, aiming to identify genetic markers that influence clinical manifestations.

The secondary objective of the thesis involves associating specific genes or genetic combinations with a severe phenotype, with the ultimate goal of applying the conclusions to prenatal screening performed during weeks sixteen to twenty of gestation.

The specific objectives pursued in this thesis include:

C. Investigating the Subject through the Literature

Recent research on Autism Spectrum Disorder (ASD) has highlighted the crucial role of genetic variations in the development and clinical manifestations of this disorder. Various studies published on PubMed have explored the genes involved and provided valuable insights into how they influence the phenotypes observed in ASD.

Special Part – Introduction

Autism Spectrum Disorder (ASD) encompasses a complex spectrum of both clinical and genetic presentations. Numerous publications—both medical and psychosocial—have reported atypical clinical cases when compared to the predominant phenotype observed in most patients diagnosed with ASD, namely those with above-average IQ. This thesis explores the link between two spectrums: the genetic and the phenotypic.

The objective is to analyze the correlation between specific genotypes and mild, moderate, or severe phenotypes, in order to statistically estimate the risk or likelihood that a fetus may present with a severe phenotype—characterized by below-average intelligence, pronounced speech and motor difficulties—or a mild phenotype, marked by minimal deficits or even above-average intelligence, as often described in Asperger syndrome, a form of autism spectrum disorder.

Discovering genotype–phenotype correlations in ASD could have a substantial impact on several domains:

This thesis will also examine sex-based differences, both in terms of ASD diagnosis and in genotypic and phenotypic presentation.

According to the European Journal of Public Health (October 2021), in Romania the diagnosis ratio for ASD reflects global trends: boys are diagnosed approximately four times more frequently than girls. This discrepancy may be explained by the fact that girls tend to exhibit subtler or different symptoms that are harder to detect, leading to underdiagnosis or delayed diagnosis.

The study will include a comparative analysis of the phenotype in male and female patients who share similar genetic make-up. This will allow an exploration of whether phenotypic variation is attributable solely to genotype, what role environmental factors might play, and whether the hormonal profile is also relevant to phenotypic expression—as is suspected in other neuropsychiatric disorders such as schizophrenia or affective disorders.

Material and Method

The study conducted in this thesis is an observational, retrospective, cross-sectional study, involving the collection of demographic, clinical, and genetic data at a single point in time. The main objective was to identify associations between genotypes and phenotypes in Autism Spectrum Disorder (ASD).

Study Location

Participants

Inclusion Criteria:

Exclusion Criteria:

Data Collection

Demographic Data:

Clinical Evaluations:

Evaluations were performed by a team of clinical psychologists and therapists.

  1. Anamnesis:
    Included detailed personal and medical history, early development, behavioral observations by parents or guardians, and family history of neurodevelopmental disorders.
  1. Behavioral Assessment:
    Observations included social interactions, repetitive behaviors, and emotional responses.
  1. Language Development Assessment:
    Specific scales were used to evaluate both verbal and non-verbal communication skills.
  1. Neurological Examination:
    Aimed at identifying signs of central or peripheral nervous system dysfunction. This included muscle tone, reflexes, and motor coordination.

Intelligence Assessment (IQ)

Behavioral and Language Evaluation

Monitored Parameters

Participants were classified according to the severity of symptoms (mild, moderate, severe) and correlations with genetic profiles were assessed.

Genotypic and Phenotypic Classification

Participants were classified based on phenotype severity using a pre-established evaluation scale:

Genotypes were grouped based on the identified genetic variations, allowing comparison between groups and evaluation of the genetic impact on clinical manifestations.

Genetic Analyses

Clinical Research and Monitoring

Statistical Methods

Quality Control and Validation

Ethical Considerations

Results

In order to associate certain genes or specific genetic combinations with mild, moderate, or severe phenotypes, the patients were distributed according to:

Additionally, patients were categorized based on CNV type: duplication, deletion, or absence of pathological CNVs.

1. Patient Distribution According to IQ Interval and Gene Association

IQ 30–40:

Associated genes:

NAA10, RENBP, HCFC1, TMEM187, IRAK1, MIR718, MECP2, OPN1LW, OPN1MW, TEX28, TKTL1, FLNA, EMD, RPL10, DNASE1L1, TAZ, ATP6AP1, GDI1, FAM50A, PLXNA3, HCFC1-AS1, MIR3202-1, MIR3202-2, OPN1MW2, OPN1MW3, SNORA70, CH17-340M24.3, MIR6858, along with other genes without pathogenic CNV or VOUS.

IQ 40–50:

Associated genes:

IMMP2L, no pathogenic CNVs or VOUS, EXOC4, LRRC8E, MAP2K7, SNAPC2, CTXN1, TIMM44, TGFBR3L, CDH4.

IQ 50–60:

Associated genes include:

SDK1, FOXK1, AP5Z1, RADIL, PAPOLB, and many others listed with either duplications, deletions, or no pathological CNV/VOUS.

IQ 60–70, 70–80, 80–90, 90–100, >100:

Similar detailed gene associations for each IQ range.

2. Patient Distribution Based on Neurological Examination

Genes associated with normal neurological examination:

Genes associated with pathological neurological examination:

3. Patient Distribution Based on Physical Appearance

4. Patient Distribution Based on Language Development

Genes associated with normal language:

Genes associated with language problems:

Detailed separately by degree (mild-moderate vs severe) and by sex.

5. Patient Distribution Based on Behavioral Assessment

Genes associated with behavior:

6. Patient Distribution Based on CNV Type

Genotype–Phenotype Correlations

Importance of CNV Type

No clear correlation could be observed between CNV type (deletion, duplication, or absence of pathological CNV) and phenotype severity.

Analysis of Other Factors

Sex Differences

Bibliography

  1. Centers for Disease Control and Prevention (CDC).
    Autism Spectrum Disorder (ASD) Data and Statistics. Retrieved from:
    www.cdc.gov
  1. European Union Statistics on Income and Living Conditions (EU-SILC).
    Autism prevalence estimates in Europe. Retrieved from:
    ec.europa.eu
  1. McClellan J, King MC.
    “Genomic analysis of mental retardation and autism: Overlapping causes.”
    New England Journal of Medicine. 2010.
  1. Buxbaum JD, et al.
    “Neuroligin mutations: Perturbing synapses in autism spectrum disorder.”
    Nature Reviews Neuroscience. 2009.
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    “Neuroinflammation and autism spectrum disorder.”
    Journal of Neuroimmunology. 2015.
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    Detailed studies on CHD8 mutations and autism phenotypes.
  1. Diagnostic and Statistical Manual of Mental Disorders, Fifth Edition (DSM-5).
    American Psychiatric Association.
  1. Lord C, Rutter M, DiLavore PC, Risi S.
    Autism Diagnostic Observation Schedule (ADOS).
    Western Psychological Services.
  1. Rutter M, Le Couteur A, Lord C.
    Autism Diagnostic Interview-Revised (ADI-R).
    Western Psychological Services.
  1. European Journal of Public Health.
    ASD Diagnosis Ratios by Sex in Romania, 2021.